Taking the proteins from the bait and prey lists from the pulldown experiments we would like to make a file containing all interactions between these to build feature vectors from:
In [1]:
cd ../../forGAVIN/pulldown_data/BAITS/
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import csv
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f = open("baits_entrez_ids.csv")
baits = list(flatten(csv.reader(f)))
f.close()
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cd ../PREYS/
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f = open("prey_entrez_ids.csv")
preys = list(flatten(csv.reader(f)))
f.close()
In [6]:
cd ..
In [9]:
import itertools
In [10]:
f = open("pulldown.interactions.Entrez.tsv","w")
c = csv.writer(f,delimiter="\t")
for pair in itertools.combinations(set(baits+preys),2):
c.writerow(pair)
f.close()